Package: CollocInfer 1.0.5
CollocInfer: Collocation Inference for Dynamic Systems
These functions implement collocation-inference for continuous-time and discrete-time stochastic processes. They provide model-based smoothing, gradient-matching, generalized profiling and forwards prediction error methods.
Authors:
CollocInfer_1.0.5.tar.gz
CollocInfer_1.0.5.zip(r-4.7-any)CollocInfer_1.0.5.zip(r-4.6-any)CollocInfer_1.0.5.zip(r-4.5-any)
CollocInfer_1.0.5.tgz(r-4.6-any)CollocInfer_1.0.5.tgz(r-4.5-any)
CollocInfer_1.0.5.tar.gz(r-4.7-any)CollocInfer_1.0.5.tar.gz(r-4.6-any)
CollocInfer_1.0.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CollocInfer/json (API)
| # Install 'CollocInfer' in R: |
| install.packages('CollocInfer', repos = c('https://gileshooker.r-universe.dev', 'https://cloud.r-project.org')) |
- ChemoData - Chemostat Example Data
- ChemoParnames - Chemostat Example Data
- ChemoPars - Chemostat Example Data
- ChemoRMData - Rosenzweig-MacArthur Model Applied to Chemostat Data
- ChemoRMPars - Rosenzweig-MacArthur Model Applied to Chemostat Data
- ChemoRMTime - Rosenzweig-MacArthur Model Applied to Chemostat Data
- ChemoTime - Chemostat Example Data
- ChemoVarnames - Chemostat Example Data
- FhNdata - FitzHugh-Nagumo data
- FhNestCoefs - Estimated Parameters for FitzHugh-Nagumo data
- FhNestPars - Estimated Parameters for FitzHugh-Nagumo data
- FhNparnames - FitzHugh-Nagumo data
- FhNpars - FitzHugh-Nagumo data
- FhNtimes - FitzHugh-Nagumo data
- FhNvarnames - FitzHugh-Nagumo data
- NSgroundwater - North Shore data
- NSrainfall - North Shore data
- NStimes - North Shore data
- RMparnames - Rosenzweig-MacArthur Model Applied to Chemostat Data
- RMvarnames - Rosenzweig-MacArthur Model Applied to Chemostat Data
- SEIRdata - SEIR data
- SEIRparnames - SEIR data
- SEIRpars - SEIR data
- SEIRtimes - SEIR data
- SEIRvarnames - SEIR data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:dc7eb4be5d. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 151 | ||
| source / vignettes | OK | 187 | ||
| linux-release | OK | 136 | ||
| macos-release | OK | 194 | ||
| macos-oldrel | OK | 172 | ||
| windows-devel | OK | 113 | ||
| windows-release | OK | 91 | ||
| windows-oldrel | OK | 112 | ||
| wasm-release | OK | 104 |
Exports:blocks2matcheck.lik.proc.data.coefscheckweightschemo.funchemo.odeCollocInferPlotsFitMatchDCFitMatchDC2FitMatchErrFitMatchListFitMatchOptforward.prediction.errorinneroptIntegrateForwardLS.setupmake.Cprocmake.cvarmake.diagnosticsmake.Dprocmake.expmake.exp.Cprocmake.exp.Dprocmake.exptransmake.fhnmake.findif.loglikmake.findif.odemake.findif.varmake.genlinmake.Henonmake.idmake.logstate.likmake.logtransmake.multinormmake.NSmake.SEIRmake.SSElikmake.SSEprocmake.var.SEIRmatmultinorm.setupNewey.WestNeweyWest.VaroderhsouteroptParsMatchDPParsMatchErrParsMatchListParsMatchOptpomp.dmeasurepomp.skeletonProfile.covarianceProfile.GausNewtProfile.LSProfile.multinormProfileDPProfileDP.AllParProfileDP1ProfileErrProfileErr.AllParProfileErr1ProfileListProfileSSEProfileSSE.AllParSmooth.LSSmooth.multinormSplineCoefsDCSplineCoefsDC2SplineCoefsDC2sparseSplineCoefsDCDPSplineCoefsDPSplineCoefsErrSplineCoefsListSplineEst.NewtRaphtrimr
Dependencies:ashbitopscliclustercolorspacecpp11deSolvedotCall64farverfdafdsFNNggplot2gluegtablehdrcdeisobandkernlabKernSmoothkslabelinglatticelifecyclelocfitMASSMatrixmclustmgcvmulticoolmvtnormnlmepcaPPpracmaR6rainbowRColorBrewerRcppRCurlrlangS7scalesspamvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Collocation Inference in R | CollocInfer-package CollocInfer |
| Chemostat Example Data | ChemoData ChemoParnames ChemoPars ChemoTime ChemoVarnames |
| Rosenzweig-MacArthur Model Applied to Chemostat Data | ChemoRMData ChemoRMPars ChemoRMTime RMparnames RMvarnames |
| Diagnostic PLots for CollocInfer | CollocInferPlots |
| FitzHugh-Nagumo data | FhNdata FhNparnames FhNpars FhNtimes FhNvarnames |
| Estimated Parameters for FitzHugh-Nagumo data | FhNest FhNestCoefs FhNestPars |
| Estimating Hidden States | FitMatchDC FitMatchDC2 FitMatchErr FitMatchList FitMatchOpt |
| forward.prediction.error | forward.prediction.error |
| Inner Optimization Functions | inneropt |
| IntegrateForward | IntegrateForward |
| Finite Difference Functions | make.findif make.findif.loglik make.findif.ode make.findif.var |
| Observation Process Distribution Function | make.lik make.multinorm make.SSElik pomp.dmeasure |
| Log Transforms | make.exp.Cproc make.exp.Dproc make.exptrans make.logstate.lik make.logtrans |
| Process Distributions | make.Cproc make.Dproc make.SSEproc |
| Transfer Functions | chemo.fun make.diagnostics make.exp make.fhn make.genlin make.Henon make.id make.NS make.SEIR make.transfer pomp.skeleton |
| Variance Functions | make.cvar make.var.SEIR make.variance |
| North Shore data | NSgroundwater NSrainfall NStimes |
| Outer Optimization Functions | outeropt |
| Estimate of Parameters from Smooth | ParsMatchDP ParsMatchErr ParsMatchList ParsMatchOpt |
| Profile.covariance | Profile.covariance |
| Profile Estimation with Collocation Inference | Profile.GausNewt ProfileDP ProfileErr ProfileList ProfileSSE |
| Profile Estimation Functions | Profile.LS Profile.multinorm |
| SEIR data | SEIRdata SEIRparnames SEIRpars SEIRtimes SEIRvarnames |
| Setup Functions for proc and lik objects | LS.setup multinorm.setup setup |
| Model-Based Smoothing Functions | Smooth.LS Smooth.multinorm |
| Spline Estimation Functions | SplineCoefsDC SplineCoefsDC2 SplineCoefsDCDP SplineCoefsDP SplineCoefsErr SplineCoefsList SplineEst.NewtRaph |